Changes

0.12.0 (2024-03-25)

  • Renamed the installed package from finch to birdhouse-finch.

  • First release of the birdhouse-finch package on PyPI.

  • Versioning now adheres to SemVer v2.0.0.

  • Added a Makefile recipe to the repository to evaluate notebooks while ignoring the output cells.

  • Cleaned up documentation to facilitate easier navigation.

  • Slightly reorganized the documentation for easier navigation.

  • Fast-forwarded the cookiecutter.

  • Fixed the Manifest.in to add all necessary files to wheel.

  • Removed references to files that have never existed (apidoc).

  • Cleaned up the setup code.

  • Added more files to be ignored in the .gitignore and in the Manifest.in.

0.11.4 (2023-12-20)

  • Fixed a bug that occurred when fixing a broken cftime-index with newer cftime versions.

  • Placed pins on xarray and pandas to prevent future errors from changes to frequency codes.

0.11.3 (2023-08-23)

  • Updated ReadTheDocs to use the new mambaforge version (2022.9).

  • Addressed calls in GitHub Action usage that were emitting warnings.

  • Updated MANIFEST.in to include and exclude the relevant files for the source distribution.

  • Modified the setup.py to only include the files necessary in the wheel.

  • Updated AUTHORS.rst to list more contributors.

  • Removed namespace file (__init__.py) from tests to ensure that they aren’t treated like an importable package.

  • Updated pre-commit hooks.

  • Sorted software requirements for legibility.

  • Removed Travis-CI shell script.

0.11.2 (2023-07-27)

  • Added a Docker-based testing suite to the GitHub Workflows.

  • Added a wider range of Python versions to test against in the GitHub Workflows.

  • Migrated conda-build action from mamba-org/provision-with-micromamba to mamba-org/setup-micromamba.

  • Cleaned up the Dockerfile. Docker now pip-installs finch directly from the GitHub repository.

  • Finch now explicitly supports Python3.11.

  • Pinned Python below 3.12 on conda and removed pin on pint for ReadTheDocs builds.

  • Added a GitHub Workflow to bump the version number and to create tags from the version bumping process on dispatch.

  • Added a pre-commit hook for validating the ReadTheDocs configuration and GitHub Workflows.

0.11.1 (2023-06-19)

  • Update to xclim 0.43.0.

  • Added xclim yml module support:

    • Added humidex days above calculation via yml module.

    • Reimplmented streamflow indicators via yml module (adjust for xclim 0.41 breaking changes).

  • Fixed bug for CanDCS-U6 ensemble “26models” list.

  • Passing an empty string to ensemble_percentiles in ensemble processes will return the merged un-reduced ensemble. The different members are listed along the realization coordinates through raw names allowing for basic distinction between the input members.

0.11.0 (2023-06-13)

  • Fixed iter_local when depth > 0 to avoid all files to be considered twice

  • Revised documentation configuration on ReadTheDocs to leverage Anaconda (Mambaforge)

  • Minor adjustments to dependency configurations

  • Removed configuration elements handling from finch start. One can still pass custom config files, but all configuration defaults are handled by finch/default.cfg and the WSGI function. jinja2 is not a dependency anymore.

0.10.0 (2022-11-04)

  • Generalize ensemble datasets configuration.

    • Datasets usable by ensemble processes are now specified through a YAML file which is pointed to in the configuration.

    • As a consequence processes are generated according to the available variables. Similarly for the allowed values of some inputs on these processes.

    • The output name now includes the dataset name (if a custom name was not specified).

    • finch.processes.xclim was removed, there is no static module of processes.

    • Input “rcp” has been renamed to “scenario”.

    • Input “dataset_name” has been fixed and renamed to “dataset”.

  • Update to xclim 0.38.0.

  • Improved subset_grid_point_dataset & subset_bbox_dataset performance when using local files.

0.9.2 (2022-07-19)

  • Fix Finch unable to startup in the Docker image.

0.9.1 (2022-07-07)

  • Avoid using a broken version of libarchive in the Docker image.

0.9.0 (2022-07-06)

  • Fix use of output_name, add output_format to xclim indicators.

  • Change all outputs to use output as the main output field name (instead of output_netcdf).

  • Updated to xclim 0.37:

    • Percentile inputs of xclim indicators have been renamed with generic names, excluding an explicit mention to the target percentile.

    • In ensemble processes, these percentiles can now be chosen through perc_[var] inputs. The default values are inherited from earlier versions of xclim.

  • Average shape process downgraded to be single-threaded, as ESMF seems to have issues with multithreading.

  • Removed deprecated processes subset_ensemble_bbox_BCCAQv2, subset_ensemble_BCCAQv2 and BCCAQv2_heat_wave_frequency_gridpoint.

  • Added csv_precision to all processes allowing CSV output. When given, it controls the number of decimal places in the output.

0.8.3 (2022-04-21)

0.8.2 (2022-02-07)

  • Add geoseries_to_netcdf process, converting a geojson (like a OGC-API request) to a CF-compliant netCDF.

  • Add output_name argument to most processes (excepted subsetting and averaging processes), to control the name (or prefix) of the output file.

  • New dependency python-slugify to ensure filenames are safe and valid.

  • Pinning dask to <=2022.1.0 to avoid a performance issue with 2022.1.1.

0.8.0 (2022-01-13)

  • Add hourly_to_daily process, converting hourly data to daily data using a reduction operation (sum, mean, max, min).

  • Upgrade to clisops 0.8.0 to accelerate spatial averages over regions.

  • Upgrade to xesmf 0.6.2 to fix spatial averaging bug not weighing correctly cells with varing areas.

  • Update to PyWPS 4.5.1 to allow the creation of recursive directories for outputs.

Notes

  • Upgrading to birdy 0.8.1 will remove annoying warnings when accessing netCDF files from THREDDS.

0.7.7 (2021-11-16)

  • Fix Sentry SDK initialization error

0.7.6 (2021-11-16)

  • Update to xclim 0.31

  • Added SENTRY_ENV configuration

  • Possibility to pass multiple “rcp” inputs for ensemble processes.

  • Writing to netcdf is done only after calling load() to avoid locks occurring within dask calls to to_netcdf in multi-processing mode.

  • Add an average parameter to ensemble processes. When true, a spatial average is returned.

0.7.5 (2021-09-07)

  • Update to xclim 0.27

  • Added empirical_quantile_mapping process calling xclim.sdba.EmpiricalQuantileMapping.

  • Update to PyWPS 4.4.5

0.7.4 (2021-05-04)

  • Update to xclim 0.26.

  • Default metadata attributes are given through configuration, instead of being hardcoded.

  • Inclusion of a list of input dataset urls in ensemble processes.

  • Correct ensemble statistics on day-of-year indicators.

0.7.3 (2021-04-13)

  • Workaround for clisops shutting down logging

  • More flexible chunking

  • New subsetting & averaging notebook

  • Require xESMF>=0.5.3

0.7.2 (2021-04-01)

  • Add data_validation and cf_compliance arguments for ensemble xclim processes.

0.7.1 (2021-03-25)

  • Add data_validation and cf_compliance arguments for xclim processes.

  • Skip data_validation checks for the BCCAQv2HeatWave process.

0.7.0 (2021-03-15)

  • Add new process averaging gridded fields over a polygon using xESMF

  • Update to xclim 0.24, allowing for considerable simplification of the indicator process building mechanism

  • Update to PyWPS 4.4

0.6.1 (2021-01-26)

  • Add partial support for xclim 0.23 with new indicators

  • Add support for land indicators

  • Add support for multivariate indicators

  • Upgrade PyWPS to 4.2.10

  • Fix bug in variable name inference

  • Add support for non-standard variable name (univariate case only)

0.6.0 (2021-01-12)

  • fix to chunk regions of subsetted files

  • use cruft to propagate changes from the birdhouse cookiecutter

  • catch documentation build error earlier since doc build is part of regular CI build

  • catch tutorial notebooks out of sync with code earlier since also part of regular CI build

  • use mock imports to facilitate building docs

  • add partial support for xclim v0.21

  • add support for shapefiles in subset_shape

0.5.2 (2020-03-25)

  • fix to remove realization coordinate from ensembles

  • added chunk datasets for local files also

  • update xclim to == 0.15.2

0.5.1 (2020-03-18)

  • fix local bccaqv2 files filtering

0.5.0 (2020-03-18)

  • update xclim to 0.15.0

  • add french translation of processes abstract and descriptions

0.4.1 (2020-03-12)

  • fix #103 (drs_filename) add defaults when project_id is unknown

  • drs_filenames: use dash instead of underscores in variable names

  • fix #80 frequency attrs of computed datasets

0.4.0 (2020-03-10)

  • Add ensembles processes

  • Allow ensemble process to specify which models are included

  • Accept multiple files for processing

  • Update from latest cookie-cutter template

  • Add grid point indicator processes

  • Add ensemble bbox processes

  • Add support for percentiles inputs

  • Update xclim to 0.14

  • Pin PyWPS to 4.2.4

  • Add DODS to supported formats for resources

0.3.x (2020-01-17)

  • Extract common inputs and outputs to wpsio.py

  • Speed up CSV creation

  • Explicitly close thread pool

  • Tests for CSV conversion

  • Added subset_shape process

  • Pin PyWPS to ~4.2.3

  • Add start and end date to bccaqv2 subset

  • Identifier DAP link by header

  • Datetime fix when replacing hour to 12

  • deprecate lon0 and lat0 for SubsetGridPointBCCAQV2Process

  • change point subset processes to accept a comma separated list of floats for multiple grid cells

0.2.7 (2019-12-09)

  • Fix for segmentation fault in libnetcdf (pin version to 4.6.2 until a fix is released)

0.2.6 (2019-12-04)

  • Notebooks are tested by Travis-CI

  • Bug fix

  • Update xclim to >= 0.12.2

  • Update pywps to > 4.2.3

0.2.5 (2019-10-03)

  • Add test for DAP input to subsetting

  • Update notebook to run on the Jenkins test suite

0.2.3 (2019-05-27)

  • Allow creating CSV output

  • Keep global attributes when computing indices

  • Add BCCAQV2HeatWave process

  • Add basic usage notebook

0.2.1 (2019-05-06)

  • Require Python>=3.6

  • Fix percentages in status update

  • Improve loggin

0.2 (2019-05-02)

  • Added subset_gridpoint process

  • Support DAP links

  • Added bounding box subsetting

  • Threshold arguments passed as strings with units

  • Added test for heat_wave_frequency

  • Use sentry to monitor error messages

  • Include Dockerfile

  • Use processes instead of threads

0.1 (2018-11-15)

  • First release.